Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC004987.2-201ENST00000395959 1148 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SPDYE21P-201ENST00000413323 827 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 HS6ST1P1-201ENST00000481504 1234 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AL512604.3-201ENST00000569583 964 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AF228730.7-201ENST00000641842 219 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 EPHB6-202ENST00000422643 3436 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 RGL4-209ENST00000612432 2649 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SYBU-203ENST00000408889 2776 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GPATCH2L-209ENST00000556663 2112 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PRKCQ-203ENST00000539722 3224 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ATP2C2-201ENST00000262429 3376 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GRM4-206ENST00000544773 2983 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 FUT8-204ENST00000394586 3559 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 NFXL1-202ENST00000381538 3728 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CR2-203ENST00000367059 3877 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DPAGT1-201ENST00000354202 2205 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 IL17REL-201ENST00000341280 3500 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ATP8A1-202ENST00000381668 8270 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 NEPRO-201ENST00000314400 4992 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 XAB2-201ENST00000358368 2667 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TMEM132D-201ENST00000389441 5305 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 CARF-213ENST00000438828 3574 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 WIPF3-201ENST00000242140 4184 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ARSG-201ENST00000448504 4642 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 KCNV1-202ENST00000524391 6979 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MTUS2-206ENST00000612955 7430 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ADPRH-204ENST00000478399 4546 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 GXYLT1P2-201ENST00000433312 1230 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC107956.1-201ENST00000494359 873 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TADA2B-205ENST00000515646 3818 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC009533.2-201ENST00000543664 586 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ZNF444P1-201ENST00000559497 298 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC083880.1-201ENST00000608266 535 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC131212.1-201ENST00000613771 668 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC079602.3-201ENST00000623931 403 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SPRED2-201ENST00000356388 4097 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC9.01□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms