Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC004987.2-201ENST00000395959 1148 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SPDYE21P-201ENST00000413323 827 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 HS6ST1P1-201ENST00000481504 1234 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AL512604.3-201ENST00000569583 964 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AF228730.7-201ENST00000641842 219 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 EPHB6-202ENST00000422643 3436 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CLGN-201ENST00000325617 3043 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 RGL4-209ENST00000612432 2649 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 SYBU-203ENST00000408889 2776 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GPATCH2L-209ENST00000556663 2112 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PRKCQ-203ENST00000539722 3224 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ATP2C2-201ENST00000262429 3376 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GRM4-206ENST00000544773 2983 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 FUT8-204ENST00000394586 3559 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 NFXL1-202ENST00000381538 3728 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CR2-203ENST00000367059 3877 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DPAGT1-201ENST00000354202 2205 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 IL17REL-201ENST00000341280 3500 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ATP8A1-202ENST00000381668 8270 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 FRMD6-203ENST00000395718 4828 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 NEPRO-201ENST00000314400 4992 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 XAB2-201ENST00000358368 2667 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TMEM132D-201ENST00000389441 5305 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 CARF-213ENST00000438828 3574 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 WIPF3-201ENST00000242140 4184 ntAPPRIS P2 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ARSG-201ENST00000448504 4642 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 KCNV1-202ENST00000524391 6979 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MTUS2-206ENST00000612955 7430 ntAPPRIS ALT2 TSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ADPRH-204ENST00000478399 4546 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 GXYLT1P2-201ENST00000433312 1230 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC107956.1-201ENST00000494359 873 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TADA2B-205ENST00000515646 3818 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC009533.2-201ENST00000543664 586 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ZNF444P1-201ENST00000559497 298 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 COPE-211ENST00000600932 1144 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC083880.1-201ENST00000608266 535 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC131212.1-201ENST00000613771 668 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC079602.3-201ENST00000623931 403 ntBASIC9.01□□□□□ -0.97
LINC00643Q86TS7 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 TBC1D14-201ENST00000409757 4925 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 SPRED2-201ENST00000356388 4097 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
LINC00643Q86TS7 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC9.01□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms