Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC10.4□□□□□ -0.74
RPL39P62891 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC10.4□□□□□ -0.74
RPL39P62891 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
RPL39P62891 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
RPL39P62891 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 SUN1-204ENST00000403868 978 ntTSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 CENPM-205ENST00000404067 905 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 CENPM-206ENST00000407253 818 ntTSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 IMP4-203ENST00000409935 958 ntTSL 5 BASIC10.4□□□□□ -0.74
RPL39P62891 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC10.4□□□□□ -0.74
RPL39P62891 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 CCND1-203ENST00000536559 553 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC10.4□□□□□ -0.74
RPL39P62891 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 KLK8-205ENST00000593490 267 ntTSL 3 BASIC10.4□□□□□ -0.74
RPL39P62891 TEX28P1-201ENST00000613479 1221 ntBASIC10.4□□□□□ -0.74
RPL39P62891 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC10.4□□□□□ -0.74
RPL39P62891 TEX28P2-201ENST00000617764 1221 ntBASIC10.4□□□□□ -0.74
RPL39P62891 GPER1-207ENST00000619052 571 ntTSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 AC009093.7-201ENST00000623853 1223 ntBASIC10.4□□□□□ -0.74
RPL39P62891 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC10.4□□□□□ -0.74
RPL39P62891 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC10.4□□□□□ -0.74
RPL39P62891 MIR193BHG-211ENST00000641433 5365 ntBASIC10.4□□□□□ -0.74
RPL39P62891 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC10.4□□□□□ -0.74
RPL39P62891 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 GRAMD4P3-201ENST00000621665 1669 ntBASIC10.4□□□□□ -0.74
RPL39P62891 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
RPL39P62891 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.75
RPL39P62891 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC10.4□□□□□ -0.75
RPL39P62891 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
RPL39P62891 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.75
RPL39P62891 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC10.4□□□□□ -0.75
RPL39P62891 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC10.4□□□□□ -0.75
RPL39P62891 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.75
RPL39P62891 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.75
RPL39P62891 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC10.4□□□□□ -0.75
RPL39P62891 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.75
RPL39P62891 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC10.4□□□□□ -0.75
RPL39P62891 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.75
RPL39P62891 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
RPL39P62891 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC10.4□□□□□ -0.75
RPL39P62891 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
RPL39P62891 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 FP325330.2-201ENST00000624219 5630 ntBASIC10.39□□□□□ -0.75
RPL39P62891 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
RPL39P62891 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 AL138799.1-201ENST00000448213 1675 ntBASIC10.39□□□□□ -0.75
RPL39P62891 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC10.39□□□□□ -0.75
RPL39P62891 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 AL645937.2-201ENST00000396808 931 ntBASIC10.39□□□□□ -0.75
RPL39P62891 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC10.39□□□□□ -0.75
RPL39P62891 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC10.39□□□□□ -0.75
RPL39P62891 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC10.39□□□□□ -0.75
RPL39P62891 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
RPL39P62891 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 TIMM17BP1-201ENST00000545713 516 ntBASIC10.39□□□□□ -0.75
RPL39P62891 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC10.39□□□□□ -0.75
RPL39P62891 MIR6074-201ENST00000612054 107 ntBASIC10.39□□□□□ -0.75
RPL39P62891 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC10.39□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms