Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 MIR1202-201ENST00000408529 83 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 AC234783.1-201ENST00000441761 496 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 RN7SL713P-201ENST00000582127 302 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 LINC02084-201ENST00000606069 1096 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 MIR6074-201ENST00000612054 107 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.12□□□□□ -0.31
CLRN1P58418 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CLRN1P58418 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CLRN1P58418 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLRN1P58418 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLRN1P58418 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.11□□□□□ -0.31
CLRN1P58418 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.11□□□□□ -0.31
CLRN1P58418 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CLRN1P58418 AC103988.2-201ENST00000561804 725 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 AP001002.3-201ENST00000623482 206 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 RHOXF1P1-202ENST00000635473 501 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
CLRN1P58418 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 RN7SL832P-201ENST00000607781 1756 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLRN1P58418 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.11□□□□□ -0.31
CLRN1P58418 AC215219.1-201ENST00000400706 1817 ntBASIC13.11□□□□□ -0.31
CLRN1P58418 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.11□□□□□ -0.31
CLRN1P58418 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms