Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 AC006538.3-201ENST00000612495 578 ntBASIC14.43□□□□□ -0.1
PKNOX1P55347 Z82170.1-201ENST00000625081 3192 ntBASIC14.43□□□□□ -0.1
PKNOX1P55347 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.43□□□□□ -0.1
PKNOX1P55347 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
PKNOX1P55347 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
PKNOX1P55347 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
PKNOX1P55347 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.42□□□□□ -0.1
PKNOX1P55347 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.42□□□□□ -0.1
PKNOX1P55347 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.42□□□□□ -0.1
PKNOX1P55347 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 PMS2P2-201ENST00000425039 1128 ntBASIC14.42□□□□□ -0.1
PKNOX1P55347 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 AC022137.2-201ENST00000503482 481 ntBASIC14.42□□□□□ -0.1
PKNOX1P55347 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 CLUHP6-201ENST00000580789 941 ntBASIC14.42□□□□□ -0.1
PKNOX1P55347 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
PKNOX1P55347 CHCHD2P3-201ENST00000603038 451 ntBASIC14.42□□□□□ -0.1
PKNOX1P55347 AC004233.3-201ENST00000607794 1269 ntBASIC14.42□□□□□ -0.1
PKNOX1P55347 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.42□□□□□ -0.1
PKNOX1P55347 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
PKNOX1P55347 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.42□□□□□ -0.1
PKNOX1P55347 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PKNOX1P55347 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PKNOX1P55347 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 AC015688.4-201ENST00000580780 1647 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
PKNOX1P55347 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.41□□□□□ -0.1
PKNOX1P55347 CYMP-203ENST00000474680 1263 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 AC009486.1-201ENST00000569860 813 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 AC004466.1-201ENST00000599515 1080 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 AJ011932.1-201ENST00000621707 465 ntBASIC14.41□□□□□ -0.1
PKNOX1P55347 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PKNOX1P55347 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PKNOX1P55347 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms