Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 AL354877.1-201ENST00000424412 413 ntBASIC13.88□□□□□ -0.19
LIM2P55344 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 GOLGA2P4-201ENST00000441462 777 ntBASIC13.88□□□□□ -0.19
LIM2P55344 HSPB1P2-201ENST00000448722 546 ntBASIC13.88□□□□□ -0.19
LIM2P55344 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.88□□□□□ -0.19
LIM2P55344 MIR6074-201ENST00000612054 107 ntBASIC13.88□□□□□ -0.19
LIM2P55344 MIR6752-201ENST00000618442 71 ntBASIC13.88□□□□□ -0.19
LIM2P55344 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.88□□□□□ -0.19
LIM2P55344 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
LIM2P55344 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LIM2P55344 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 AC011474.4-201ENST00000623523 2076 ntBASIC13.87□□□□□ -0.19
LIM2P55344 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.87□□□□□ -0.19
LIM2P55344 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.87□□□□□ -0.19
LIM2P55344 BTBD6P1-201ENST00000412176 1267 ntBASIC13.87□□□□□ -0.19
LIM2P55344 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.87□□□□□ -0.19
LIM2P55344 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 AL033527.4-201ENST00000641026 673 ntBASIC13.87□□□□□ -0.19
LIM2P55344 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 AC244394.1-201ENST00000435000 1665 ntBASIC13.87□□□□□ -0.19
LIM2P55344 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
LIM2P55344 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.87□□□□□ -0.19
LIM2P55344 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.87□□□□□ -0.19
LIM2P55344 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms