Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 AL390754.1-201ENST00000619088 582 ntBASIC12.96□□□□□ -0.33
SOX2P48431 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 AC093028.1-201ENST00000622998 982 ntBASIC12.96□□□□□ -0.33
SOX2P48431 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.96□□□□□ -0.33
SOX2P48431 PRSS30P-206ENST00000641773 873 ntBASIC12.96□□□□□ -0.33
SOX2P48431 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.96□□□□□ -0.33
SOX2P48431 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 AC099521.3-201ENST00000624251 2938 ntBASIC12.96□□□□□ -0.33
SOX2P48431 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
SOX2P48431 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.96□□□□□ -0.34
SOX2P48431 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.34
SOX2P48431 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
SOX2P48431 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
SOX2P48431 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
SOX2P48431 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.96□□□□□ -0.34
SOX2P48431 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.96□□□□□ -0.34
SOX2P48431 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
SOX2P48431 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.34
SOX2P48431 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.96□□□□□ -0.34
SOX2P48431 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
SOX2P48431 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.95□□□□□ -0.34
SOX2P48431 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 TPRX2P-201ENST00000535362 881 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC023310.3-201ENST00000557027 670 ntBASIC12.95□□□□□ -0.34
SOX2P48431 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.95□□□□□ -0.34
SOX2P48431 AC100756.1-201ENST00000562736 682 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC138749.3-201ENST00000567691 622 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC015911.4-201ENST00000588022 1070 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.95□□□□□ -0.34
SOX2P48431 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.95□□□□□ -0.34
SOX2P48431 AL390955.2-201ENST00000603032 514 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC116165.1-201ENST00000611806 668 ntBASIC12.95□□□□□ -0.34
SOX2P48431 AC007431.3-201ENST00000623221 587 ntBASIC12.95□□□□□ -0.34
SOX2P48431 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 AC003102.2-201ENST00000589195 1469 ntBASIC12.95□□□□□ -0.34
SOX2P48431 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
SOX2P48431 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
SOX2P48431 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.95□□□□□ -0.34
SOX2P48431 TCAF1P1-201ENST00000414990 2232 ntBASIC12.94□□□□□ -0.34
SOX2P48431 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.94□□□□□ -0.34
SOX2P48431 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms