Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.15■□□□□ 0.02
PTPN9P43378 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.15■□□□□ 0.02
PTPN9P43378 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PTPN9P43378 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 AL928921.2-201ENST00000641325 2442 ntBASIC15.15■□□□□ 0.02
PTPN9P43378 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.15■□□□□ 0.02
PTPN9P43378 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.15■□□□□ 0.02
PTPN9P43378 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PTPN9P43378 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 MBLAC2-202ENST00000514906 1936 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.14■□□□□ 0.01
PTPN9P43378 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 RPS2P32-201ENST00000439199 892 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 VDAC1P1-201ENST00000439229 848 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 AC021723.1-201ENST00000486306 515 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.14■□□□□ 0.01
PTPN9P43378 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 AC003686.1-201ENST00000550956 1034 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 BNIP3P13-201ENST00000599968 566 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 AC005695.3-201ENST00000614522 232 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 AC022748.3-201ENST00000621828 275 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.14■□□□□ 0.01
PTPN9P43378 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.14■□□□□ 0.01
PTPN9P43378 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
PTPN9P43378 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 AL022313.4-201ENST00000562756 2046 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 LAP3P2-201ENST00000454686 1454 ntBASIC15.14■□□□□ 0.01
PTPN9P43378 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTPN9P43378 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms