Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 MIR6720-201ENST00000611664 98 ntBASIC13.78□□□□□ -0.2
LDB3O75112 AC005695.3-201ENST00000614522 232 ntBASIC13.78□□□□□ -0.2
LDB3O75112 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.78□□□□□ -0.2
LDB3O75112 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.78□□□□□ -0.2
LDB3O75112 AL162426.1-201ENST00000624141 743 ntBASIC13.78□□□□□ -0.2
LDB3O75112 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.78□□□□□ -0.2
LDB3O75112 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
LDB3O75112 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
LDB3O75112 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LDB3O75112 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 MIR663B-201ENST00000408361 115 ntBASIC13.77□□□□□ -0.21
LDB3O75112 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.77□□□□□ -0.21
LDB3O75112 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 AL591846.1-201ENST00000451736 433 ntBASIC13.77□□□□□ -0.21
LDB3O75112 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 AC021723.1-201ENST00000486306 515 ntBASIC13.77□□□□□ -0.21
LDB3O75112 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.77□□□□□ -0.21
LDB3O75112 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 AC104982.3-201ENST00000581995 514 ntBASIC13.77□□□□□ -0.21
LDB3O75112 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.77□□□□□ -0.21
LDB3O75112 RN7SL219P-201ENST00000582872 296 ntBASIC13.77□□□□□ -0.21
LDB3O75112 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 RN7SL832P-201ENST00000607781 1756 ntBASIC13.77□□□□□ -0.21
LDB3O75112 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.77□□□□□ -0.21
LDB3O75112 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 AC009093.10-201ENST00000641956 1442 ntBASIC13.77□□□□□ -0.21
LDB3O75112 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LDB3O75112 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LDB3O75112 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.76□□□□□ -0.21
LDB3O75112 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LDB3O75112 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 239.2 ms