Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP2AO43633 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CHMP2AO43633 AC144522.1-201ENST00000625111 1658 ntBASIC16.46■□□□□ 0.23
CHMP2AO43633 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CHMP2AO43633 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CHMP2AO43633 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
CHMP2AO43633 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CHMP2AO43633 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.46■□□□□ 0.22
CHMP2AO43633 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 AC016700.1-201ENST00000429424 312 ntBASIC16.45■□□□□ 0.22
CHMP2AO43633 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CHMP2AO43633 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.45■□□□□ 0.22
CHMP2AO43633 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.45■□□□□ 0.22
CHMP2AO43633 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 AC103810.3-201ENST00000583567 96 ntBASIC16.45■□□□□ 0.22
CHMP2AO43633 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.45■□□□□ 0.22
CHMP2AO43633 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 CYP4F23P-201ENST00000593402 1579 ntBASIC16.45■□□□□ 0.22
CHMP2AO43633 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.45■□□□□ 0.22
CHMP2AO43633 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.45■□□□□ 0.22
CHMP2AO43633 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CHMP2AO43633 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CHMP2AO43633 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.44■□□□□ 0.22
CHMP2AO43633 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 FAM90A7P-201ENST00000382628 1395 ntBASIC16.44■□□□□ 0.22
CHMP2AO43633 FAM90A23P-201ENST00000400136 1395 ntBASIC16.44■□□□□ 0.22
CHMP2AO43633 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.44■□□□□ 0.22
CHMP2AO43633 AKR7A2P1-201ENST00000460134 915 ntBASIC16.44■□□□□ 0.22
CHMP2AO43633 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.44■□□□□ 0.22
CHMP2AO43633 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 AC215219.1-201ENST00000400706 1817 ntBASIC16.44■□□□□ 0.22
CHMP2AO43633 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CHMP2AO43633 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CHMP2AO43633 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CHMP2AO43633 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms