Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TOMM22P5-201ENST00000416399 439 ntBASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AL158070.2-201ENST00000623713 1621 ntBASIC10.75□□□□□ -0.69
SMKR1H3BMG3 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 HLA-A-201ENST00000376802 1334 ntBASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AL645937.6-201ENST00000641122 3727 ntBASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AL136172.1-201ENST00000598590 1394 ntBASIC10.75□□□□□ -0.69
SMKR1H3BMG3 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
SMKR1H3BMG3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 NCLP1-201ENST00000445357 1963 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AC015688.4-201ENST00000580780 1647 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 KRT18P32-201ENST00000424695 1287 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 FAM58DP-201ENST00000428076 619 ntBASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC10.74□□□□□ -0.69
SMKR1H3BMG3 SLC25A6P4-201ENST00000586535 553 ntBASIC10.74□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms