Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 FNTAP2-201ENST00000430308 634 ntBASIC13.98□□□□□ -0.17
CCDC88CQ9P219 CHMP1AP1-201ENST00000445563 662 ntBASIC13.98□□□□□ -0.17
CCDC88CQ9P219 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 AC126915.1-201ENST00000522847 1038 ntBASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 RN7SL774P-201ENST00000577467 290 ntBASIC13.98□□□□□ -0.17
CCDC88CQ9P219 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 AF254983.2-201ENST00000612331 135 ntBASIC13.98□□□□□ -0.17
CCDC88CQ9P219 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.98□□□□□ -0.17
CCDC88CQ9P219 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 CYP46A4P-201ENST00000414953 267 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AC068587.10-201ENST00000641210 219 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 KRT8P21-201ENST00000430398 1491 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AC012617.1-204ENST00000586340 2305 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC88CQ9P219 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.97□□□□□ -0.17
CCDC88CQ9P219 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.96□□□□□ -0.17
CCDC88CQ9P219 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 AC010327.5-201ENST00000586923 3061 ntBASIC13.96□□□□□ -0.17
CCDC88CQ9P219 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC88CQ9P219 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms