Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 GRPEL2P1-201ENST00000453145 339 ntBASIC14.4□□□□□ -0.1
TTC28Q96AY4 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TTC28Q96AY4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
TTC28Q96AY4 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
TTC28Q96AY4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 SRSF9P1-201ENST00000399149 530 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 AC005011.1-201ENST00000455206 210 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 AC100858.1-201ENST00000514059 1228 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 MIR5091-201ENST00000578707 93 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 AP000845.1-201ENST00000581677 2131 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 KRT8P18-201ENST00000413425 1445 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 AL645608.8-201ENST00000606034 2086 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ACTBP14-201ENST00000411655 1089 ntBASIC14.39□□□□□ -0.11
TTC28Q96AY4 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ZNF677-210ENST00000601413 706 ntTSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TTC28Q96AY4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
TTC28Q96AY4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 RN7SL47P-201ENST00000488710 299 ntBASIC14.38□□□□□ -0.11
TTC28Q96AY4 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AC022296.3-201ENST00000608823 403 ntBASIC14.38□□□□□ -0.11
TTC28Q96AY4 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AC092115.1-201ENST00000566277 1402 ntBASIC14.38□□□□□ -0.11
TTC28Q96AY4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 KHSRPP1-201ENST00000427983 1768 ntBASIC14.38□□□□□ -0.11
TTC28Q96AY4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 ZSCAN21-201ENST00000292450 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 MECP2-226ENST00000640414 897 ntTSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TTC28Q96AY4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TTC28Q96AY4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms