Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 Z97205.2-201ENST00000564697 1639 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC098614.1-201ENST00000368528 745 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC011495.1-201ENST00000498085 584 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC104596.2-201ENST00000512793 793 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 TP53TG3HP-202ENST00000569755 579 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AP001002.2-201ENST00000625137 386 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 AC130686.1-201ENST00000622936 2466 ntBASIC13.78□□□□□ -0.2
DEPDC4Q8N2C3 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 AL118506.1-201ENST00000601296 3082 ntBASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
DEPDC4Q8N2C3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 GNAQP1-201ENST00000444815 1067 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AL023775.1-201ENST00000454907 1746 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 RN7SL692P-201ENST00000464677 288 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 LSS-211ENST00000522411 2523 ntTSL 2 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 CR383656.12-201ENST00000549567 513 ntBASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
DEPDC4Q8N2C3 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms