Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TCF4-202ENST00000356073 8317 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 RGS8-201ENST00000258302 5606 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ARMCX2-203ENST00000356824 2674 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 HMGB1-206ENST00000405805 4199 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AIF1L-201ENST00000247291 3364 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 C1QTNF6-201ENST00000337843 2934 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 GREB1L-202ENST00000424526 6052 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TMPO-212ENST00000556029 4242 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 LINC01987-201ENST00000593118 2281 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 HAUS5-201ENST00000203166 4283 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 DYNC1I1-204ENST00000437599 2895 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 GPR156-202ENST00000461057 2525 ntAPPRIS ALT1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ARRDC3-AS1-201ENST00000625713 2500 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 HPSE2-201ENST00000370546 1849 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 CD36-207ENST00000432207 1808 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ADAM19-201ENST00000257527 6481 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 SEC23B-201ENST00000262544 3176 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 EDRF1-201ENST00000337623 4387 ntAPPRIS P3 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 MED24-201ENST00000356271 3446 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ARMC1-202ENST00000458464 2849 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 LINC01106-201ENST00000436665 2244 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 LINC00908-202ENST00000578613 2242 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 RAB6A-202ENST00000336083 3085 ntAPPRIS ALT1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 FAHD2A-201ENST00000233379 4757 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 BOLL-201ENST00000282278 2742 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 UNC93B5-201ENST00000530315 699 ntBASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AC074044.1-201ENST00000609673 707 ntBASIC9.03□□□□□ -0.96
LINC00643Q86TS7 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 AL589702.1-201ENST00000641229 1509 ntBASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ZNF493-208ENST00000599461 1769 ntBASIC9.03□□□□□ -0.96
LINC00643Q86TS7 CALM1-201ENST00000356978 4242 ntAPPRIS P2 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 FAM196A-201ENST00000424811 3149 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ITM2B-202ENST00000378565 10137 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 HSPA8P9-201ENST00000485881 1943 ntBASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ELN-205ENST00000358929 3967 ntAPPRIS ALT2 TSL 5 BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 CDH4-203ENST00000614565 6513 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
LINC00643Q86TS7 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 KCND3-203ENST00000369697 7396 ntAPPRIS ALT1 TSL 1 (best) BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 AL162231.4-201ENST00000564224 3264 ntTSL 2 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 UBTF-206ENST00000527034 3010 ntTSL 5 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 UNC93A-201ENST00000230256 2116 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 ZSCAN21-205ENST00000543588 1870 ntTSL 2 BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 HERC2P9-203ENST00000528584 2947 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
LINC00643Q86TS7 NCAM1-225ENST00000618266 5937 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 LINC02202-201ENST00000499583 2664 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 TP53I11-220ENST00000533940 3703 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 PCDHA4-204ENST00000618834 10557 ntBASIC9.02□□□□□ -0.97
LINC00643Q86TS7 KDM7A-201ENST00000397560 9272 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CH25H-201ENST00000371852 1686 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC9.02□□□□□ -0.97
LINC00643Q86TS7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC9.02□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms