Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC007663.3-201ENST00000609632 465 ntBASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC244093.1-201ENST00000610837 814 ntBASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 MIR6787-201ENST00000616675 61 ntBASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC020907.1-201ENST00000616460 1350 ntBASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RFWD3Q6PCD5 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 MIR1247-201ENST00000408206 136 ntBASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AC010141.1-201ENST00000411585 623 ntBASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 MIR3615-201ENST00000581999 87 ntBASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.3■□□□□ 0.04
RFWD3Q6PCD5 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 COL6A4P2-202ENST00000504443 2753 ntBASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 AL136172.1-201ENST00000598590 1394 ntBASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RFWD3Q6PCD5 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms