Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 AP000356.3-201ENST00000382243 753 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC12.87□□□□□ -0.35
TFF3Q07654 XBP1P1-201ENST00000436573 652 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC12.87□□□□□ -0.35
TFF3Q07654 NAGK-204ENST00000443872 878 ntTSL 3 BASIC12.87□□□□□ -0.35
TFF3Q07654 NDUFS6P1-201ENST00000485187 316 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 CTBP2P4-201ENST00000513884 920 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.87□□□□□ -0.35
TFF3Q07654 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.87□□□□□ -0.35
TFF3Q07654 MIR4649-201ENST00000582839 64 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC12.87□□□□□ -0.35
TFF3Q07654 GMFG-209ENST00000600322 622 ntTSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 AC007881.3-201ENST00000608897 607 ntBASIC12.87□□□□□ -0.35
TFF3Q07654 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 DDX5-235ENST00000630471 473 ntTSL 4 BASIC12.87□□□□□ -0.35
TFF3Q07654 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
TFF3Q07654 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
TFF3Q07654 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
TFF3Q07654 AC015909.3-201ENST00000572855 1794 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.86□□□□□ -0.35
TFF3Q07654 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.86□□□□□ -0.35
TFF3Q07654 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
TFF3Q07654 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 MIR557-201ENST00000385239 98 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 AL512430.1-201ENST00000392575 860 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
TFF3Q07654 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.86□□□□□ -0.35
TFF3Q07654 AL592076.1-201ENST00000424448 303 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 RPL13AP19-201ENST00000434320 584 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC12.86□□□□□ -0.35
TFF3Q07654 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC12.86□□□□□ -0.35
TFF3Q07654 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
TFF3Q07654 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 MIR3188-201ENST00000583494 85 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 RPL17P45-201ENST00000586289 509 ntBASIC12.86□□□□□ -0.35
TFF3Q07654 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.86□□□□□ -0.35
TFF3Q07654 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.86□□□□□ -0.35
TFF3Q07654 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.86□□□□□ -0.35
TFF3Q07654 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
TFF3Q07654 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
TFF3Q07654 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms