Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.11□□□□□ -0.31
H3F3AP84243 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.11□□□□□ -0.31
H3F3AP84243 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
H3F3AP84243 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.11□□□□□ -0.31
H3F3AP84243 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
H3F3AP84243 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
H3F3AP84243 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.11□□□□□ -0.31
H3F3AP84243 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.11□□□□□ -0.31
H3F3AP84243 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 AL591846.1-201ENST00000451736 433 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 AC027237.1-201ENST00000560942 655 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.1□□□□□ -0.31
H3F3AP84243 MIR6720-201ENST00000611664 98 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 AL096828.3-201ENST00000615354 462 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.1□□□□□ -0.31
H3F3AP84243 AL033527.4-201ENST00000641026 673 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 Z98259.2-201ENST00000641583 609 ntBASIC13.1□□□□□ -0.31
H3F3AP84243 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
H3F3AP84243 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
H3F3AP84243 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.1□□□□□ -0.31
H3F3AP84243 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
H3F3AP84243 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
H3F3AP84243 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
H3F3AP84243 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.09□□□□□ -0.31
H3F3AP84243 RN7SL832P-201ENST00000607781 1756 ntBASIC13.09□□□□□ -0.31
H3F3AP84243 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.09□□□□□ -0.31
H3F3AP84243 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.09□□□□□ -0.31
H3F3AP84243 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
H3F3AP84243 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
H3F3AP84243 TMBIM7P-202ENST00000641474 1516 ntBASIC13.09□□□□□ -0.31
H3F3AP84243 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
H3F3AP84243 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.09□□□□□ -0.31
H3F3AP84243 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms