Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
CX3CL1P78423 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 FTH1P14-201ENST00000482930 551 ntBASIC11.88□□□□□ -0.51
CX3CL1P78423 MESTP3-201ENST00000503460 968 ntBASIC11.88□□□□□ -0.51
CX3CL1P78423 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 RBM7-207ENST00000544582 692 ntTSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.88□□□□□ -0.51
CX3CL1P78423 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 DGCR9-201ENST00000609630 2415 ntBASIC11.88□□□□□ -0.51
CX3CL1P78423 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
CX3CL1P78423 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.88□□□□□ -0.51
CX3CL1P78423 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CX3CL1P78423 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.88□□□□□ -0.51
CX3CL1P78423 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 CLUHP2-201ENST00000426660 1303 ntBASIC11.87□□□□□ -0.51
CX3CL1P78423 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
CX3CL1P78423 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
CX3CL1P78423 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 MXI1-205ENST00000393134 889 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.87□□□□□ -0.51
CX3CL1P78423 AC005034.1-201ENST00000426657 489 ntBASIC11.87□□□□□ -0.51
CX3CL1P78423 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 FTLP10-202ENST00000505798 471 ntBASIC11.87□□□□□ -0.51
CX3CL1P78423 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CX3CL1P78423 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 APOC4-201ENST00000591600 348 ntTSL 3 BASIC11.87□□□□□ -0.51
CX3CL1P78423 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
CX3CL1P78423 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC11.87□□□□□ -0.51
CX3CL1P78423 AC138466.3-201ENST00000619983 221 ntBASIC11.87□□□□□ -0.51
CX3CL1P78423 PFAS-212ENST00000625942 396 ntTSL 5 BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms