Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.91□□□□□ -0.5
LMO4P61968 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
LMO4P61968 NORAD-201ENST00000565493 5339 ntBASIC11.91□□□□□ -0.5
LMO4P61968 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 BRD7P5-201ENST00000299197 1822 ntBASIC11.91□□□□□ -0.5
LMO4P61968 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LMO4P61968 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 AC073869.2-201ENST00000417338 1026 ntBASIC11.91□□□□□ -0.5
LMO4P61968 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC11.91□□□□□ -0.5
LMO4P61968 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC11.91□□□□□ -0.5
LMO4P61968 AC135983.4-201ENST00000564116 1262 ntBASIC11.91□□□□□ -0.5
LMO4P61968 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.91□□□□□ -0.5
LMO4P61968 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 AC007881.3-201ENST00000608897 607 ntBASIC11.91□□□□□ -0.5
LMO4P61968 AC104506.1-201ENST00000609247 429 ntBASIC11.91□□□□□ -0.5
LMO4P61968 MIR6727-201ENST00000620702 65 ntBASIC11.91□□□□□ -0.5
LMO4P61968 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
LMO4P61968 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC11.91□□□□□ -0.5
LMO4P61968 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC11.91□□□□□ -0.5
LMO4P61968 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.91□□□□□ -0.5
LMO4P61968 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
LMO4P61968 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LMO4P61968 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LMO4P61968 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 AC064801.2-201ENST00000625052 1303 ntBASIC11.9□□□□□ -0.5
LMO4P61968 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC11.9□□□□□ -0.5
LMO4P61968 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LMO4P61968 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LMO4P61968 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LMO4P61968 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LMO4P61968 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC11.9□□□□□ -0.5
LMO4P61968 OR8T1P-201ENST00000421347 918 ntBASIC11.9□□□□□ -0.5
LMO4P61968 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 RPL7P35-201ENST00000446943 740 ntBASIC11.9□□□□□ -0.5
LMO4P61968 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC11.9□□□□□ -0.5
LMO4P61968 RN7SL81P-201ENST00000493781 261 ntBASIC11.9□□□□□ -0.5
LMO4P61968 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC11.9□□□□□ -0.5
LMO4P61968 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
LMO4P61968 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC11.9□□□□□ -0.5
LMO4P61968 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC11.9□□□□□ -0.5
LMO4P61968 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC11.9□□□□□ -0.5
LMO4P61968 AP003419.4-201ENST00000616071 517 ntBASIC11.9□□□□□ -0.5
LMO4P61968 AP001184.1-201ENST00000637936 376 ntBASIC11.9□□□□□ -0.5
LMO4P61968 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LMO4P61968 HLA-DQB1-202ENST00000399079 1501 ntBASIC11.9□□□□□ -0.5
LMO4P61968 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC11.9□□□□□ -0.5
LMO4P61968 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC11.9□□□□□ -0.5
LMO4P61968 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms