Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
EPHB3P54753 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
EPHB3P54753 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
EPHB3P54753 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
EPHB3P54753 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.21■□□□□ 0.03
EPHB3P54753 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.21■□□□□ 0.03
EPHB3P54753 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 AC074138.1-201ENST00000611182 1303 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
EPHB3P54753 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.21■□□□□ 0.03
EPHB3P54753 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.21■□□□□ 0.03
EPHB3P54753 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.21■□□□□ 0.03
EPHB3P54753 AC098935.1-201ENST00000446057 611 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 AC008267.1-201ENST00000474858 1069 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 AC114947.1-202ENST00000514136 344 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
EPHB3P54753 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 AC140658.4-201ENST00000561990 352 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 AC005586.2-201ENST00000563946 837 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.21■□□□□ 0.03
EPHB3P54753 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
EPHB3P54753 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.21■□□□□ 0.03
EPHB3P54753 AC021016.3-201ENST00000608367 477 ntBASIC15.21■□□□□ 0.03
EPHB3P54753 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
EPHB3P54753 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
EPHB3P54753 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
EPHB3P54753 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 AC092384.3-202ENST00000564646 2873 ntBASIC15.21■□□□□ 0.02
EPHB3P54753 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
EPHB3P54753 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
EPHB3P54753 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
EPHB3P54753 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
EPHB3P54753 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
EPHB3P54753 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
EPHB3P54753 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.2■□□□□ 0.02
EPHB3P54753 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 AL807761.2-201ENST00000422849 729 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 IQSEC3P1-201ENST00000538799 536 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 MIR5572-201ENST00000583188 137 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 SIGLEC18P-201ENST00000602271 909 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 AC007326.1-201ENST00000604539 458 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 AC073352.2-201ENST00000609385 439 ntBASIC15.2■□□□□ 0.02
EPHB3P54753 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.2■□□□□ 0.02
EPHB3P54753 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
EPHB3P54753 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
EPHB3P54753 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC15.2■□□□□ 0.02
EPHB3P54753 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms