Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
LIG3P49916 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 TMEM14DP-201ENST00000422205 345 ntBASIC15.53■□□□□ 0.08
LIG3P49916 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.53■□□□□ 0.08
LIG3P49916 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.53■□□□□ 0.08
LIG3P49916 ENPP7P5-201ENST00000541031 1031 ntBASIC15.53■□□□□ 0.08
LIG3P49916 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.53■□□□□ 0.08
LIG3P49916 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.53■□□□□ 0.08
LIG3P49916 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LIG3P49916 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.53■□□□□ 0.08
LIG3P49916 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LIG3P49916 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 AC018529.2-202ENST00000611482 3087 ntBASIC15.52■□□□□ 0.08
LIG3P49916 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.52■□□□□ 0.08
LIG3P49916 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.52■□□□□ 0.08
LIG3P49916 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC15.52■□□□□ 0.08
LIG3P49916 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.52■□□□□ 0.08
LIG3P49916 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.52■□□□□ 0.08
LIG3P49916 U91328.1-201ENST00000437528 223 ntBASIC15.52■□□□□ 0.08
LIG3P49916 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.52■□□□□ 0.08
LIG3P49916 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.52■□□□□ 0.08
LIG3P49916 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.52■□□□□ 0.08
LIG3P49916 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.52■□□□□ 0.08
LIG3P49916 AC107373.2-201ENST00000607735 490 ntBASIC15.52■□□□□ 0.08
LIG3P49916 RPSAP52-203ENST00000622976 1023 ntBASIC15.52■□□□□ 0.08
LIG3P49916 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LIG3P49916 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.52■□□□□ 0.07
LIG3P49916 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.52■□□□□ 0.07
LIG3P49916 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.52■□□□□ 0.07
LIG3P49916 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC15.52■□□□□ 0.07
LIG3P49916 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LIG3P49916 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
LIG3P49916 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC15.52■□□□□ 0.07
LIG3P49916 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.52■□□□□ 0.07
LIG3P49916 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LIG3P49916 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.52■□□□□ 0.07
LIG3P49916 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC15.51■□□□□ 0.07
LIG3P49916 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.51■□□□□ 0.07
LIG3P49916 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.51■□□□□ 0.07
LIG3P49916 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC15.51■□□□□ 0.07
LIG3P49916 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LIG3P49916 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LIG3P49916 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms