Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 AP002761.4-201ENST00000565433 3361 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 MIR574-201ENST00000385209 96 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 FABP5-202ENST00000396359 986 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 AL080243.2-201ENST00000418783 582 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC12.27□□□□□ -0.45
HOXA1P49639 MIR3687-2-201ENST00000577708 61 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 MIR3687-1-201ENST00000614492 61 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 AC107375.1-201ENST00000564464 2231 ntBASIC12.27□□□□□ -0.45
HOXA1P49639 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HOXA1P49639 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.27□□□□□ -0.45
HOXA1P49639 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.27□□□□□ -0.45
HOXA1P49639 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC12.26□□□□□ -0.45
HOXA1P49639 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.26□□□□□ -0.45
HOXA1P49639 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 SPOCK3-207ENST00000504953 2900 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXA1P49639 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXA1P49639 RN7SL618P-201ENST00000477850 296 ntBASIC12.26□□□□□ -0.45
HOXA1P49639 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXA1P49639 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXA1P49639 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXA1P49639 AF228730.6-201ENST00000641497 218 ntBASIC12.26□□□□□ -0.45
HOXA1P49639 AC084121.3-201ENST00000641716 218 ntBASIC12.26□□□□□ -0.45
HOXA1P49639 SUPT20HL1-201ENST00000436466 2618 ntBASIC12.26□□□□□ -0.45
HOXA1P49639 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXA1P49639 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms