Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 AL162727.3-201ENST00000635661 2787 ntBASIC18.12■□□□□ 0.49
RFC4P35249 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.12■□□□□ 0.49
RFC4P35249 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.12■□□□□ 0.49
RFC4P35249 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
RFC4P35249 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
RFC4P35249 MIR1301-201ENST00000408518 82 ntBASIC18.12■□□□□ 0.49
RFC4P35249 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 ACTBP7-201ENST00000418351 1124 ntBASIC18.12■□□□□ 0.49
RFC4P35249 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.12■□□□□ 0.49
RFC4P35249 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 GRPEL2P1-201ENST00000453145 339 ntBASIC18.12■□□□□ 0.49
RFC4P35249 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 USB1-205ENST00000561743 1135 ntTSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 LINC00554-201ENST00000564841 3011 ntBASIC18.12■□□□□ 0.49
RFC4P35249 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
RFC4P35249 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC18.12■□□□□ 0.49
RFC4P35249 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RFC4P35249 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.12■□□□□ 0.49
RFC4P35249 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
RFC4P35249 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RFC4P35249 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
RFC4P35249 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC18.11■□□□□ 0.49
RFC4P35249 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 KRT18P46-201ENST00000435568 1279 ntBASIC18.11■□□□□ 0.49
RFC4P35249 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 AC026470.1-201ENST00000478038 846 ntBASIC18.11■□□□□ 0.49
RFC4P35249 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.11■□□□□ 0.49
RFC4P35249 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 IGHV1-12-201ENST00000518307 205 ntBASIC18.11■□□□□ 0.49
RFC4P35249 NAA40-205ENST00000539656 577 ntTSL 4 BASIC18.11■□□□□ 0.49
RFC4P35249 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC18.11■□□□□ 0.49
RFC4P35249 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC18.11■□□□□ 0.49
RFC4P35249 TRMT112P3-201ENST00000580149 358 ntBASIC18.11■□□□□ 0.49
RFC4P35249 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 FUCA1P1-201ENST00000374476 1351 ntBASIC18.11■□□□□ 0.49
RFC4P35249 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
RFC4P35249 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC18.11■□□□□ 0.49
RFC4P35249 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
RFC4P35249 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC18.11■□□□□ 0.49
RFC4P35249 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RFC4P35249 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.11■□□□□ 0.49
RFC4P35249 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.1■□□□□ 0.49
RFC4P35249 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.1■□□□□ 0.49
RFC4P35249 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.1■□□□□ 0.49
RFC4P35249 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.1■□□□□ 0.49
RFC4P35249 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC18.1■□□□□ 0.49
RFC4P35249 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
RFC4P35249 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RFC4P35249 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC18.1■□□□□ 0.49
RFC4P35249 VENTXP4-201ENST00000449029 958 ntBASIC18.1■□□□□ 0.49
RFC4P35249 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms