Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC10.84□□□□□ -0.67
CKS2P33552 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC10.84□□□□□ -0.67
CKS2P33552 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
CKS2P33552 STXBP5L-201ENST00000273666 9496 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CKS2P33552 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC10.84□□□□□ -0.67
CKS2P33552 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CKS2P33552 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC10.83□□□□□ -0.68
CKS2P33552 ZNF407-201ENST00000299687 7948 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 C2-206ENST00000442278 2434 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 AGAP10P-201ENST00000454844 2418 ntBASIC10.83□□□□□ -0.68
CKS2P33552 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
CKS2P33552 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
CKS2P33552 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC10.83□□□□□ -0.68
CKS2P33552 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 LINC01225-203ENST00000563550 1244 ntBASIC10.83□□□□□ -0.68
CKS2P33552 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC10.83□□□□□ -0.68
CKS2P33552 AC026120.1-201ENST00000611536 926 ntBASIC10.83□□□□□ -0.68
CKS2P33552 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC10.83□□□□□ -0.68
CKS2P33552 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
CKS2P33552 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 AKNA-202ENST00000307564 7380 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
CKS2P33552 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC10.83□□□□□ -0.68
CKS2P33552 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC10.83□□□□□ -0.68
CKS2P33552 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC10.82□□□□□ -0.68
CKS2P33552 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC10.82□□□□□ -0.68
CKS2P33552 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 EML1-203ENST00000334192 4064 ntTSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 CAMK2A-201ENST00000348628 5322 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 KIAA0319-205ENST00000543707 5314 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
CKS2P33552 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
CKS2P33552 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
CKS2P33552 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
CKS2P33552 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
CKS2P33552 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
CKS2P33552 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CKS2P33552 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms