Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 AL157407.1-201ENST00000435784 904 ntBASIC17.26■□□□□ 0.35
HMGB1P09429 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HMGB1P09429 SNX29P1-201ENST00000548357 1007 ntBASIC17.26■□□□□ 0.35
HMGB1P09429 MIR6720-201ENST00000611664 98 ntBASIC17.26■□□□□ 0.35
HMGB1P09429 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HMGB1P09429 MIR6775-201ENST00000617557 69 ntBASIC17.26■□□□□ 0.35
HMGB1P09429 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC17.26■□□□□ 0.35
HMGB1P09429 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HMGB1P09429 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.26■□□□□ 0.35
HMGB1P09429 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.25■□□□□ 0.35
HMGB1P09429 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 YBX1P6-201ENST00000442962 1002 ntBASIC17.25■□□□□ 0.35
HMGB1P09429 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC17.25■□□□□ 0.35
HMGB1P09429 TNN-203ENST00000622870 3719 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.25■□□□□ 0.35
HMGB1P09429 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HMGB1P09429 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 TUBB8P4-201ENST00000511806 1324 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 KRT8P24-201ENST00000560290 1559 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
HMGB1P09429 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 HLA-V-201ENST00000429037 534 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 AL645933.1-201ENST00000440087 609 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.24■□□□□ 0.35
HMGB1P09429 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGB1P09429 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGB1P09429 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms