Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
SPTA1P02549 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.22□□□□□ -0.29
SPTA1P02549 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.22□□□□□ -0.29
SPTA1P02549 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SPTA1P02549 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC13.22□□□□□ -0.29
SPTA1P02549 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
SPTA1P02549 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC13.21□□□□□ -0.29
SPTA1P02549 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.21□□□□□ -0.29
SPTA1P02549 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 CCL25-202ENST00000315626 450 ntTSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 BX088651.3-201ENST00000418155 352 ntBASIC13.21□□□□□ -0.29
SPTA1P02549 FAM197Y6-201ENST00000420524 766 ntBASIC13.21□□□□□ -0.29
SPTA1P02549 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC13.21□□□□□ -0.29
SPTA1P02549 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.21□□□□□ -0.29
SPTA1P02549 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
SPTA1P02549 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SPTA1P02549 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
SPTA1P02549 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.21□□□□□ -0.29
SPTA1P02549 AP000845.1-201ENST00000581677 2131 ntBASIC13.21□□□□□ -0.29
SPTA1P02549 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
SPTA1P02549 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.21□□□□□ -0.3
SPTA1P02549 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 ACTG1P19-201ENST00000418987 1116 ntBASIC13.21□□□□□ -0.3
SPTA1P02549 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 AC018638.5-201ENST00000450885 754 ntBASIC13.21□□□□□ -0.3
SPTA1P02549 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC13.21□□□□□ -0.3
SPTA1P02549 AC063952.3-201ENST00000467756 308 ntBASIC13.21□□□□□ -0.3
SPTA1P02549 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
SPTA1P02549 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC13.21□□□□□ -0.3
SPTA1P02549 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.21□□□□□ -0.3
SPTA1P02549 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC13.21□□□□□ -0.3
SPTA1P02549 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 AP002353.1-201ENST00000528257 1599 ntBASIC13.21□□□□□ -0.3
SPTA1P02549 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.21□□□□□ -0.3
SPTA1P02549 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SPTA1P02549 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.21□□□□□ -0.3
SPTA1P02549 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.21□□□□□ -0.3
SPTA1P02549 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.21□□□□□ -0.3
SPTA1P02549 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 CUL2-210ENST00000626172 4115 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 JTB-202ENST00000356648 1040 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC13.2□□□□□ -0.3
SPTA1P02549 TREHP1-201ENST00000531328 465 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 MBP-238ENST00000580402 915 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 PAUPAR-201ENST00000630360 2965 ntBASIC13.2□□□□□ -0.3
SPTA1P02549 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 VWA5B1-201ENST00000289815 4475 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.2□□□□□ -0.3
SPTA1P02549 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SPTA1P02549 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.2□□□□□ -0.3
SPTA1P02549 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms