Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 AC006453.4-201ENST00000636949 1252 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 AL591163.1-201ENST00000641757 987 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 CU639417.3-201ENST00000624240 1404 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.2□□□□□ -0.14
CLDN9O95484 CICP16-201ENST00000502609 2813 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 AL354989.2-201ENST00000435838 1540 ntBASIC14.2□□□□□ -0.14
CLDN9O95484 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.2□□□□□ -0.14
CLDN9O95484 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLDN9O95484 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 KRT8P24-201ENST00000560290 1559 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLDN9O95484 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 CNN2P8-201ENST00000421872 913 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
CLDN9O95484 AC007551.1-201ENST00000457394 519 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.19□□□□□ -0.14
CLDN9O95484 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 AC078819.1-201ENST00000547454 765 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 AC012085.1-201ENST00000548270 765 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 RN7SL713P-201ENST00000582127 302 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 AC244669.2-201ENST00000612320 853 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 AC138951.2-201ENST00000623455 1161 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 KRT8P28-201ENST00000433288 1390 ntBASIC14.19□□□□□ -0.14
CLDN9O95484 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLDN9O95484 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CLDN9O95484 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
CLDN9O95484 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CLDN9O95484 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.18□□□□□ -0.14
CLDN9O95484 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLDN9O95484 AC138969.2-201ENST00000532739 9932 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 AC009093.10-201ENST00000641956 1442 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CLDN9O95484 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLDN9O95484 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.18□□□□□ -0.14
CLDN9O95484 TMEM14DP-201ENST00000422205 345 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 AL035414.1-201ENST00000451327 857 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLDN9O95484 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.18□□□□□ -0.14
CLDN9O95484 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.18□□□□□ -0.14
CLDN9O95484 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.18□□□□□ -0.14
CLDN9O95484 COX5BP1-201ENST00000507622 393 ntBASIC14.18□□□□□ -0.14
CLDN9O95484 AP005018.1-201ENST00000525475 301 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms