Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VPS9D1Q9Y2B5 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 MFSD8-213ENST00000641134 1327 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AC139712.1-201ENST00000378256 1875 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FAM8A4P-201ENST00000435433 1213 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 PUDPP3-201ENST00000445368 636 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 BCRP2-202ENST00000447763 634 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 BCRP6-201ENST00000510112 632 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 BCRP7-201ENST00000511549 544 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AC106820.3-201ENST00000561653 397 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AC008735.3-201ENST00000596646 500 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AP001002.3-201ENST00000623482 206 ntBASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VPS9D1Q9Y2B5 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC152010.1-201ENST00000415779 2006 ntBASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC090505.1-201ENST00000430515 1834 ntBASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC103988.2-201ENST00000561804 725 ntBASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC034229.4-201ENST00000607861 441 ntBASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS9D1Q9Y2B5 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
VPS9D1Q9Y2B5 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
VPS9D1Q9Y2B5 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
VPS9D1Q9Y2B5 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms