Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KRT8P14-201ENST00000414254 1442 ntBASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 TERF1P3-201ENST00000505638 1227 ntBASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 AC022447.6-201ENST00000515522 438 ntBASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 AC008494.3-201ENST00000606615 944 ntBASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 DMBT1P1-203ENST00000636837 4628 ntBASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 AC020658.7-201ENST00000624274 2442 ntBASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 RNU1-114P-201ENST00000365297 166 ntBASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CCDC39Q9UFE4 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC019294.4-201ENST00000561777 2905 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AL162726.2-201ENST00000438986 1017 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC022616.1-201ENST00000518688 554 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC190387.1-201ENST00000551683 408 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms