Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 AL807761.2-201ENST00000422849 729 ntBASIC16.39■□□□□ 0.21
COL20A1Q9P218 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 AC009560.1-201ENST00000620208 434 ntBASIC16.39■□□□□ 0.21
COL20A1Q9P218 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.39■□□□□ 0.21
COL20A1Q9P218 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL20A1Q9P218 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 RN7SL832P-201ENST00000607781 1756 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AL512430.1-201ENST00000392575 860 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 MPRIPP1-201ENST00000452433 1089 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC007326.1-201ENST00000604539 458 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC103810.10-201ENST00000606504 343 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 MIR6074-201ENST00000612054 107 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 MIR6842-201ENST00000612539 65 ntBASIC16.38■□□□□ 0.21
COL20A1Q9P218 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL20A1Q9P218 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL20A1Q9P218 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL20A1Q9P218 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL20A1Q9P218 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL20A1Q9P218 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL20A1Q9P218 NOC2LP1-201ENST00000450578 752 ntBASIC16.37■□□□□ 0.21
COL20A1Q9P218 FTH1P22-201ENST00000456305 520 ntBASIC16.37■□□□□ 0.21
COL20A1Q9P218 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.37■□□□□ 0.21
COL20A1Q9P218 AC114947.1-202ENST00000514136 344 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms