Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.75■□□□□ 0.27
USP28Q96RU2 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
USP28Q96RU2 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC16.75■□□□□ 0.27
USP28Q96RU2 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP28Q96RU2 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
USP28Q96RU2 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP28Q96RU2 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
USP28Q96RU2 AL161932.2-201ENST00000435436 679 ntBASIC16.74■□□□□ 0.27
USP28Q96RU2 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.74■□□□□ 0.27
USP28Q96RU2 AC073413.1-201ENST00000603927 732 ntBASIC16.74■□□□□ 0.27
USP28Q96RU2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.74■□□□□ 0.27
USP28Q96RU2 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.74■□□□□ 0.27
USP28Q96RU2 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP28Q96RU2 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC16.74■□□□□ 0.27
USP28Q96RU2 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 CICP17-201ENST00000418553 2377 ntBASIC16.73■□□□□ 0.27
USP28Q96RU2 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.73■□□□□ 0.27
USP28Q96RU2 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.73■□□□□ 0.27
USP28Q96RU2 CICP12-201ENST00000455801 843 ntBASIC16.73■□□□□ 0.27
USP28Q96RU2 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.73■□□□□ 0.27
USP28Q96RU2 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.73■□□□□ 0.27
USP28Q96RU2 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
USP28Q96RU2 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
USP28Q96RU2 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 AL358472.3-201ENST00000608147 415 ntBASIC16.73■□□□□ 0.27
USP28Q96RU2 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.73■□□□□ 0.27
USP28Q96RU2 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
USP28Q96RU2 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.73■□□□□ 0.27
USP28Q96RU2 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms