Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PDLIM5Q96HC4 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 FAM58BP-201ENST00000439056 645 ntBASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 CTBP2P5-201ENST00000454986 1264 ntBASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AP006547.1-201ENST00000563435 692 ntBASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PDLIM5Q96HC4 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 E2F3P2-201ENST00000447755 1422 ntBASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
PDLIM5Q96HC4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 AC079776.1-201ENST00000401540 1152 ntBASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 ST13P19-201ENST00000442505 1124 ntBASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 MIR6720-201ENST00000611664 98 ntBASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 AC244157.2-201ENST00000616239 1006 ntBASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
PDLIM5Q96HC4 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms