Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 EEF1DP5-201ENST00000431410 772 ntBASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CCDC88AQ3V6T2 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 VENTXP3-201ENST00000546480 773 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 FOXN3-AS2-201ENST00000554071 1262 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 RPS18P9-201ENST00000482817 460 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AL590235.1-201ENST00000564650 861 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 AC018846.1-201ENST00000568231 183 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 SNORD3B-1-201ENST00000577988 758 ntBASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC88AQ3V6T2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 AL591424.3-201ENST00000614278 872 ntBASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 AC090386.2-201ENST00000623010 1039 ntBASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 MSANTD2P1-201ENST00000445341 1368 ntBASIC17.49■□□□□ 0.39
CCDC88AQ3V6T2 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms