Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 AC113367.3-201ENST00000508316 1912 ntBASIC13.59□□□□□ -0.23
RNF4P78317 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
RNF4P78317 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 GPAA1P2-201ENST00000417923 928 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AL645933.1-201ENST00000440087 609 ntBASIC13.59□□□□□ -0.23
RNF4P78317 RPL18P13-201ENST00000478088 569 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AC099548.2-209ENST00000480264 625 ntBASIC13.59□□□□□ -0.23
RNF4P78317 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 AC005740.2-201ENST00000511085 419 ntBASIC13.59□□□□□ -0.23
RNF4P78317 ZNF767P-206ENST00000513792 565 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AC044849.1-201ENST00000519737 1188 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.59□□□□□ -0.23
RNF4P78317 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC13.59□□□□□ -0.23
RNF4P78317 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.59□□□□□ -0.23
RNF4P78317 RN7SL163P-201ENST00000583100 276 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AC005962.1-201ENST00000584100 773 ntBASIC13.59□□□□□ -0.23
RNF4P78317 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 AC004923.1-202ENST00000642106 209 ntBASIC13.59□□□□□ -0.23
RNF4P78317 AC106881.1-201ENST00000605849 3329 ntBASIC13.59□□□□□ -0.23
RNF4P78317 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.59□□□□□ -0.23
RNF4P78317 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.59□□□□□ -0.23
RNF4P78317 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
RNF4P78317 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
RNF4P78317 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.58□□□□□ -0.23
RNF4P78317 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.58□□□□□ -0.23
RNF4P78317 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.58□□□□□ -0.23
RNF4P78317 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
RNF4P78317 MYADML-201ENST00000474610 2147 ntBASIC13.58□□□□□ -0.23
RNF4P78317 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
RNF4P78317 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
RNF4P78317 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.58□□□□□ -0.24
RNF4P78317 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RNF4P78317 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RNF4P78317 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
RNF4P78317 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
RNF4P78317 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 DPM3-202ENST00000368399 517 ntBASIC13.58□□□□□ -0.24
RNF4P78317 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.58□□□□□ -0.24
RNF4P78317 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.58□□□□□ -0.24
RNF4P78317 AC091804.1-201ENST00000486888 567 ntBASIC13.58□□□□□ -0.24
RNF4P78317 AC106794.1-201ENST00000506935 792 ntBASIC13.58□□□□□ -0.24
RNF4P78317 AC022447.6-201ENST00000515522 438 ntBASIC13.58□□□□□ -0.24
RNF4P78317 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 AL451050.2-201ENST00000606967 682 ntBASIC13.58□□□□□ -0.24
RNF4P78317 AC244093.1-201ENST00000610837 814 ntBASIC13.58□□□□□ -0.24
RNF4P78317 AL589935.2-201ENST00000616471 1231 ntBASIC13.58□□□□□ -0.24
RNF4P78317 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.58□□□□□ -0.24
RNF4P78317 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.58□□□□□ -0.24
RNF4P78317 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.58□□□□□ -0.24
RNF4P78317 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.58□□□□□ -0.24
RNF4P78317 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.58□□□□□ -0.24
RNF4P78317 TMBIM7P-202ENST00000641474 1516 ntBASIC13.58□□□□□ -0.24
RNF4P78317 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.58□□□□□ -0.24
RNF4P78317 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.58□□□□□ -0.24
RNF4P78317 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms