Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.39□□□□□ -0.27
HOXD4P09016 AL136295.7-201ENST00000619226 1200 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.39□□□□□ -0.27
HOXD4P09016 AC002472.3-201ENST00000640124 621 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.39□□□□□ -0.27
HOXD4P09016 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
HOXD4P09016 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 LINC01230-201ENST00000625222 3017 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 AL928921.2-201ENST00000641325 2442 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 AC090616.6-203ENST00000579186 1945 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HOXD4P09016 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXD4P09016 AC018735.1-201ENST00000437208 1502 ntBASIC13.39□□□□□ -0.27
HOXD4P09016 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXD4P09016 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXD4P09016 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
HOXD4P09016 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 MIR769-201ENST00000390225 118 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXD4P09016 RN7SL769P-201ENST00000469386 295 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 PARP8-206ENST00000503665 572 ntTSL 4 BASIC13.38□□□□□ -0.27
HOXD4P09016 AP003171.2-201ENST00000528208 925 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 AC105129.2-201ENST00000559536 390 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXD4P09016 RN7SL163P-201ENST00000583100 276 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXD4P09016 AL451050.2-201ENST00000606967 682 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 AC138696.2-201ENST00000607376 223 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.38□□□□□ -0.27
HOXD4P09016 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 AL136301.1-201ENST00000615830 422 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 AC138627.1-207ENST00000641560 1006 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
HOXD4P09016 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXD4P09016 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 AL365209.1-201ENST00000624418 6473 ntBASIC13.38□□□□□ -0.27
HOXD4P09016 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HOXD4P09016 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
HOXD4P09016 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXD4P09016 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms