Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 TMEM198B-204ENST00000484016 896 ntBASIC11.92□□□□□ -0.5
FOXA2Q9Y261 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 SLC25A47P1-201ENST00000531577 414 ntBASIC11.92□□□□□ -0.5
FOXA2Q9Y261 APRT-204ENST00000563655 709 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 RPSAP52-203ENST00000622976 1023 ntBASIC11.92□□□□□ -0.5
FOXA2Q9Y261 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA2Q9Y261 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AL138725.1-201ENST00000407347 1314 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 C2orf27AP3-201ENST00000434123 579 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AP001889.1-201ENST00000525414 633 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 VPS18-202ENST00000558474 873 ntTSL 3 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 BTNL10-201ENST00000595971 695 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AL354718.3-201ENST00000616414 581 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CR382287.1-201ENST00000623954 586 ntBASIC11.91□□□□□ -0.5
FOXA2Q9Y261 PFAS-212ENST00000625942 396 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
FOXA2Q9Y261 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms