Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SHROOM4Q9ULL8 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 HNRNPA1P58-201ENST00000403629 610 ntBASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AC004522.1-201ENST00000419978 654 ntBASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AP000322.3-201ENST00000608665 388 ntBASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AL627230.2-201ENST00000613254 655 ntBASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 TP53-221ENST00000615910 1149 ntTSL 5 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 KHSRPP1-201ENST00000427983 1768 ntBASIC27.48■■□□□ 1.99
SHROOM4Q9ULL8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 AC003686.1-201ENST00000550956 1034 ntBASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
SHROOM4Q9ULL8 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 RNA5SP417-201ENST00000516459 108 ntBASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SHROOM4Q9ULL8 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 PGAM1P12-201ENST00000505622 748 ntBASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC27.45■■□□□ 1.99
SHROOM4Q9ULL8 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SHROOM4Q9ULL8 AC015688.4-201ENST00000580780 1647 ntBASIC27.45■■□□□ 1.98
SHROOM4Q9ULL8 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SHROOM4Q9ULL8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SHROOM4Q9ULL8 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AC026470.1-201ENST00000478038 846 ntBASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 CD164-210ENST00000512821 964 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AC004554.1-201ENST00000422830 1468 ntBASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC27.44■■□□□ 1.98
SHROOM4Q9ULL8 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC27.44■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms