Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 AC090164.2-201ENST00000611487 516 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 AL136295.7-201ENST00000619226 1200 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 REXO1L4P-201ENST00000605109 1937 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 AC020910.5-201ENST00000623668 1865 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 CICP4-201ENST00000447359 2812 ntBASIC15.99■□□□□ 0.15
VPS52Q8N1B4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS52Q8N1B4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 E2F3P2-201ENST00000447755 1422 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 TMEM198B-204ENST00000484016 896 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 MARK2P5-201ENST00000507649 634 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 DUX4L46-201ENST00000566845 751 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 MIR4722-201ENST00000578292 60 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC138696.2-201ENST00000607376 223 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC011840.2-201ENST00000563063 1520 ntBASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS52Q8N1B4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 PARP8-206ENST00000503665 572 ntTSL 4 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 AL161670.2-201ENST00000557650 1227 ntBASIC15.97■□□□□ 0.15
VPS52Q8N1B4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
VPS52Q8N1B4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms