Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 TXNDC2-202ENST00000357775 2830 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 TUBGCP2-201ENST00000252936 3885 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NTNG1-207ENST00000370073 3347 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SYTL2-206ENST00000389960 4299 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 LDLR-203ENST00000535915 2768 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AAK1-201ENST00000406297 4499 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ARHGAP20-202ENST00000524756 6180 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 HIST1H2APS4-201ENST00000362070 348 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 KRT16P4-201ENST00000453883 522 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AP005242.2-201ENST00000580065 1175 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AL139246.5-201ENST00000606645 996 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AC004623.1-201ENST00000624592 2127 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AC116562.4-202ENST00000641738 218 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AC006037.2-201ENST00000622975 2232 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 CAPN10-AS1-201ENST00000567819 4000 ntBASIC9.06□□□□□ -0.96
LINC00643Q86TS7 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ADAM8-202ENST00000445355 3279 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 MYBPC3-204ENST00000545968 4226 ntAPPRIS P2 TSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 TMCO4-202ENST00000375127 2403 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ADAMTS20-202ENST00000395541 4633 ntTSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 MROH7-TTC4-201ENST00000414150 5867 ntAPPRIS P5 TSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NBR1-202ENST00000542611 2703 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 IKZF4-202ENST00000431367 5021 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 CLTCL1-210ENST00000617926 1695 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 COL20A1-201ENST00000358894 4172 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 ACCS-201ENST00000263776 2362 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 LINC00894-206ENST00000450989 2361 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 DNAJB12-204ENST00000461919 2369 ntTSL 2 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 SLC26A2-201ENST00000286298 8080 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
LINC00643Q86TS7 KRT8P35-201ENST00000483942 1338 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 PHB-210ENST00000511832 1509 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SLC3A1-205ENST00000409387 2334 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ATXN10-201ENST00000252934 3329 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CIT-203ENST00000392521 8708 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 HYPK-201ENST00000406925 4777 ntAPPRIS P2 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SEPT6-205ENST00000394610 4694 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CICP7-201ENST00000432723 2477 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 GOLGA6L2-202ENST00000345070 1972 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 PDE5A-202ENST00000354960 7154 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AP000523.1-201ENST00000398242 1049 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC9.05□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms