RNA–Protein interactions for RNA: ENST00000358894.10

COL20A1-201, Transcript of collagen type XX alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL20A1, Length 4,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1-201ENST00000358894 NISCHQ9Y2I1 1504 aa23.06■■□□□ 1.28
COL20A1-201ENST00000358894 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
COL20A1-201ENST00000358894 SHROOM4Q9ULL8 1493 aa21.14■□□□□ 0.98
COL20A1-201ENST00000358894 SUPT5HO00267 1087 aaKnown RBP21.08■□□□□ 0.97
COL20A1-201ENST00000358894 EHMT2Q96KQ7 1210 aa19.94■□□□□ 0.78
COL20A1-201ENST00000358894 PCGF6Q9BYE7 350 aa19.8■□□□□ 0.76
COL20A1-201ENST00000358894 FAM9AQ8IZU1 332 aaPredicted RBP19.71■□□□□ 0.75
COL20A1-201ENST00000358894 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
COL20A1-201ENST00000358894 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
COL20A1-201ENST00000358894 LOC105371045A0A1W2PR82 267 aa19.41■□□□□ 0.7
COL20A1-201ENST00000358894 PELP1Q8IZL8 1130 aaKnown RBP19.38■□□□□ 0.69
COL20A1-201ENST00000358894 ZCCHC6Q5VYS8 1495 aaKnown RBP19.3■□□□□ 0.68
COL20A1-201ENST00000358894 TTBK1Q5TCY1 1321 aaPredicted RBP19.25■□□□□ 0.67
COL20A1-201ENST00000358894 HRCP23327 699 aa19.22■□□□□ 0.67
COL20A1-201ENST00000358894 PPARGC1BQ86YN6 1023 aaKnown RBP19.1■□□□□ 0.65
COL20A1-201ENST00000358894 TRIM26Q12899 539 aaPredicted RBP19.05■□□□□ 0.64
COL20A1-201ENST00000358894 CCDC180Q9P1Z9 1646 aa19.03■□□□□ 0.64
COL20A1-201ENST00000358894 ABCC9O60706 1549 aa18.99■□□□□ 0.63
COL20A1-201ENST00000358894 MYT1Q01538 1121 aa18.98■□□□□ 0.63
COL20A1-201ENST00000358894 RANGAP1P46060 587 aaPredicted RBP18.92■□□□□ 0.62
COL20A1-201ENST00000358894 ZEB1P37275 1124 aaPredicted RBP18.91■□□□□ 0.62
COL20A1-201ENST00000358894 CCER1Q8TC90 406 aaPredicted RBP18.89■□□□□ 0.61
COL20A1-201ENST00000358894 UBTFP17480 764 aaKnown RBP18.88■□□□□ 0.61
COL20A1-201ENST00000358894 APLP2Q06481 763 aa18.87■□□□□ 0.61
COL20A1-201ENST00000358894 MYO15BQ96JP2 1530 aa18.84■□□□□ 0.61
COL20A1-201ENST00000358894 SCRIBQ14160 1630 aa18.73■□□□□ 0.59
COL20A1-201ENST00000358894 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
COL20A1-201ENST00000358894 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
COL20A1-201ENST00000358894 DCAF1Q9Y4B6 1507 aa18.48■□□□□ 0.55
COL20A1-201ENST00000358894 RSF1Q96T23 1441 aaPredicted RBP18.46■□□□□ 0.55
COL20A1-201ENST00000358894 CENPBP07199 599 aaPredicted RBP18.44■□□□□ 0.54
COL20A1-201ENST00000358894 HNRNPUL2Q1KMD3 747 aaKnown RBP18.4■□□□□ 0.54
COL20A1-201ENST00000358894 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
COL20A1-201ENST00000358894 YTHDC1Q96MU7 727 aaKnown RBP18.35■□□□□ 0.53
COL20A1-201ENST00000358894 ITGAEP38570 1179 aa18.22■□□□□ 0.51
COL20A1-201ENST00000358894 CSRNP3Q8WYN3 585 aa18.21■□□□□ 0.51
COL20A1-201ENST00000358894 CECR2Q9BXF3 1484 aa18.2■□□□□ 0.5
COL20A1-201ENST00000358894 DIEXFQ68CQ4 756 aaKnown RBP18.17■□□□□ 0.5
COL20A1-201ENST00000358894 RB1CC1Q8TDY2 1594 aa18.1■□□□□ 0.49
COL20A1-201ENST00000358894 NACADO15069 1562 aa18.09■□□□□ 0.49
COL20A1-201ENST00000358894 MROH2BQ7Z745 1585 aa17.99■□□□□ 0.47
COL20A1-201ENST00000358894 GTF3C3Q9Y5Q9 886 aa17.94■□□□□ 0.46
COL20A1-201ENST00000358894 ERICH6Q7L0X2 663 aa17.87■□□□□ 0.45
COL20A1-201ENST00000358894 ZNF316A6NFI3 1004 aaPredicted RBP17.86■□□□□ 0.45
COL20A1-201ENST00000358894 BAZ1AQ9NRL2 1556 aaPredicted RBP17.86■□□□□ 0.45
COL20A1-201ENST00000358894 CEP162Q5TB80 1403 aa17.84■□□□□ 0.45
COL20A1-201ENST00000358894 FAM50AQ14320 339 aaKnown RBP17.81■□□□□ 0.44
COL20A1-201ENST00000358894 WIZO95785 1651 aa17.8■□□□□ 0.44
COL20A1-201ENST00000358894 SCAF1Q9H7N4 1312 aaKnown RBP17.78■□□□□ 0.44
COL20A1-201ENST00000358894 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.44
COL20A1-201ENST00000358894 SOGA1O94964 1423 aa17.76■□□□□ 0.43
COL20A1-201ENST00000358894 P3H3Q8IVL6 736 aa17.75■□□□□ 0.43
COL20A1-201ENST00000358894 ABCC8Q09428 1581 aa17.75■□□□□ 0.43
COL20A1-201ENST00000358894 WRNQ14191 1432 aaPredicted RBP eCLIP17.75■□□□□ 0.43
COL20A1-201ENST00000358894 CLIP1P30622 1438 aa17.71■□□□□ 0.43
COL20A1-201ENST00000358894 CCDC88BA6NC98 1476 aa17.71■□□□□ 0.43
COL20A1-201ENST00000358894 NEUROD1Q13562 356 aa17.7■□□□□ 0.42
COL20A1-201ENST00000358894 TNIKQ9UKE5 1360 aa17.7■□□□□ 0.42
COL20A1-201ENST00000358894 EEA1Q15075 1411 aa17.68■□□□□ 0.42
COL20A1-201ENST00000358894 GOLGA3Q08378 1498 aa17.68■□□□□ 0.42
COL20A1-201ENST00000358894 NEFLP07196 543 aa17.62■□□□□ 0.41
COL20A1-201ENST00000358894 BAZ1BQ9UIG0 1483 aaKnown RBP17.61■□□□□ 0.41
COL20A1-201ENST00000358894 CEP164Q9UPV0 1460 aa17.54■□□□□ 0.4
COL20A1-201ENST00000358894 TOP2AP11388 1531 aaKnown RBP17.53■□□□□ 0.4
COL20A1-201ENST00000358894 MIER1Q8N108 512 aa17.51■□□□□ 0.39
COL20A1-201ENST00000358894 CNGB1Q14028 1251 aaPredicted RBP17.5■□□□□ 0.39
COL20A1-201ENST00000358894 POLR3GLQ9BT43 218 aa17.47■□□□□ 0.39
COL20A1-201ENST00000358894 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
COL20A1-201ENST00000358894 ARID3CA6NKF2 412 aa17.47■□□□□ 0.39
COL20A1-201ENST00000358894 TRIM52Q96A61 297 aa17.46■□□□□ 0.38
COL20A1-201ENST00000358894 SMARCA4P51532 1647 aa17.44■□□□□ 0.38
COL20A1-201ENST00000358894 BCANQ96GW7 911 aa17.43■□□□□ 0.38
COL20A1-201ENST00000358894 KIF27Q86VH2 1401 aa17.36■□□□□ 0.37
COL20A1-201ENST00000358894 VPS8Q8N3P4 1428 aa17.33■□□□□ 0.36
COL20A1-201ENST00000358894 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
COL20A1-201ENST00000358894 DDX10Q13206 875 aaKnown RBP17.32■□□□□ 0.36
COL20A1-201ENST00000358894 ANP32CO43423 234 aa17.31■□□□□ 0.36
COL20A1-201ENST00000358894 KANK4Q5T7N3 995 aaPredicted RBP17.3■□□□□ 0.36
COL20A1-201ENST00000358894 HIRIP3Q9BW71 556 aaPredicted RBP17.29■□□□□ 0.36
COL20A1-201ENST00000358894 FBLN2P98095 1184 aa17.27■□□□□ 0.36
COL20A1-201ENST00000358894 ATAD2BQ9ULI0 1458 aa17.27■□□□□ 0.36
COL20A1-201ENST00000358894 RAPGEF2Q9Y4G8 1499 aa17.26■□□□□ 0.35
COL20A1-201ENST00000358894 ZNF326Q5BKZ1 582 aaKnown RBP17.22■□□□□ 0.35
COL20A1-201ENST00000358894 CHIC2Q9UKJ5 165 aa17.22■□□□□ 0.35
COL20A1-201ENST00000358894 TONSLQ96HA7 1378 aa17.21■□□□□ 0.34
COL20A1-201ENST00000358894 CUX2O14529 1486 aa17.19■□□□□ 0.34
COL20A1-201ENST00000358894 MTUS2Q5JR59 1369 aa17.18■□□□□ 0.34
COL20A1-201ENST00000358894 CCNB3Q8WWL7 1395 aa17.16■□□□□ 0.34
COL20A1-201ENST00000358894 SIN3AQ96ST3 1273 aa17.15■□□□□ 0.34
COL20A1-201ENST00000358894 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
COL20A1-201ENST00000358894 ZNF777Q9ULD5 760 aaPredicted RBP17.13■□□□□ 0.33
COL20A1-201ENST00000358894 BCL11AQ9H165 835 aa17.11■□□□□ 0.33
COL20A1-201ENST00000358894 FKBP8Q14318 412 aa17.1■□□□□ 0.33
COL20A1-201ENST00000358894 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
COL20A1-201ENST00000358894 RRP7BPQ9NSQ0 103 aa17.09■□□□□ 0.33
COL20A1-201ENST00000358894 CLSPNQ9HAW4 1339 aa17.09■□□□□ 0.33
COL20A1-201ENST00000358894 HNRNPUQ00839 825 aaKnown RBP eCLIP17.01■□□□□ 0.31
COL20A1-201ENST00000358894 SYNJ1O43426 1573 aa17.01■□□□□ 0.31
COL20A1-201ENST00000358894 CDK11AQ9UQ88 783 aaPredicted RBP17.01■□□□□ 0.31
COL20A1-201ENST00000358894 FHAD1B1AJZ9 1412 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms