Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 AC023157.3-201ENST00000619086 2088 ntBASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 FAM90A2P-201ENST00000511144 1395 ntBASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 FAM90A25P-201ENST00000528404 1395 ntBASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RNFT1Q5M7Z0 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AL627231.1-201ENST00000394467 1125 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AC026316.1-201ENST00000398900 414 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 TSPY25P-201ENST00000429463 745 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AC007688.1-201ENST00000475592 759 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AC008723.1-201ENST00000506922 207 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 PGAM1P5-201ENST00000548011 764 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 PHBP15-201ENST00000574228 665 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 MIR3677-201ENST00000578964 60 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 WDR7-208ENST00000589935 544 ntTSL 4 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 U62317.3-201ENST00000608319 855 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AC103691.2-201ENST00000618824 433 ntBASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RNFT1Q5M7Z0 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC126177.1-201ENST00000547829 2218 ntBASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms