Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 RN7SL8P-201ENST00000461771 266 ntBASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 TMCO5B-205ENST00000530020 894 ntBASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHROOM1Q2M3G4 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 RPL13AP19-201ENST00000434320 584 ntBASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 RPL18AP3-201ENST00000462885 528 ntBASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 FGD5P1-202ENST00000614866 2498 ntBASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 IL9RP3-201ENST00000442856 1674 ntBASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SHROOM1Q2M3G4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 MYADML-201ENST00000474610 2147 ntBASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SHROOM1Q2M3G4 ALG1L13P-202ENST00000519320 584 ntBASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms