Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SHMT1P1-201ENST00000419974 1312 ntBASIC17.77■□□□□ 0.43
NUP98P52948 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.77■□□□□ 0.43
NUP98P52948 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP98P52948 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP98P52948 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP98P52948 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
NUP98P52948 KRT18P46-201ENST00000435568 1279 ntBASIC17.77■□□□□ 0.43
NUP98P52948 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.77■□□□□ 0.43
NUP98P52948 RPL35P9-201ENST00000446059 350 ntBASIC17.77■□□□□ 0.43
NUP98P52948 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
NUP98P52948 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.77■□□□□ 0.43
NUP98P52948 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NUP98P52948 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.77■□□□□ 0.43
NUP98P52948 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
NUP98P52948 AC144831.1-201ENST00000573312 2656 ntBASIC17.77■□□□□ 0.43
NUP98P52948 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.77■□□□□ 0.43
NUP98P52948 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
NUP98P52948 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
NUP98P52948 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP98P52948 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 TUBB8P4-201ENST00000511806 1324 ntBASIC17.76■□□□□ 0.43
NUP98P52948 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 COX20P1-201ENST00000366529 357 ntBASIC17.76■□□□□ 0.43
NUP98P52948 AC073210.1-201ENST00000414799 232 ntBASIC17.76■□□□□ 0.43
NUP98P52948 BCAS2P2-201ENST00000425064 674 ntBASIC17.76■□□□□ 0.43
NUP98P52948 IDS-203ENST00000428056 1213 ntTSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 AL135901.1-201ENST00000451812 333 ntBASIC17.76■□□□□ 0.43
NUP98P52948 ALG1L3P-201ENST00000503331 765 ntBASIC17.76■□□□□ 0.43
NUP98P52948 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.76■□□□□ 0.43
NUP98P52948 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP98P52948 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP98P52948 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NUP98P52948 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.76■□□□□ 0.43
NUP98P52948 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NUP98P52948 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NUP98P52948 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP98P52948 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 AC015909.5-201ENST00000624336 2266 ntBASIC17.75■□□□□ 0.43
NUP98P52948 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NUP98P52948 HMGA1P1-201ENST00000415560 1062 ntBASIC17.75■□□□□ 0.43
NUP98P52948 KRT17P4-201ENST00000429445 819 ntBASIC17.75■□□□□ 0.43
NUP98P52948 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NUP98P52948 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 AC012073.1-201ENST00000606114 1108 ntBASIC17.75■□□□□ 0.43
NUP98P52948 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC17.75■□□□□ 0.43
NUP98P52948 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NUP98P52948 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 AL672207.1-201ENST00000328462 1570 ntBASIC17.75■□□□□ 0.43
NUP98P52948 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NUP98P52948 AC010234.1-201ENST00000494599 870 ntBASIC17.75■□□□□ 0.43
NUP98P52948 AC106047.2-201ENST00000511723 743 ntBASIC17.75■□□□□ 0.43
NUP98P52948 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NUP98P52948 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.75■□□□□ 0.43
NUP98P52948 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC17.75■□□□□ 0.43
NUP98P52948 AC002472.4-201ENST00000641915 272 ntBASIC17.75■□□□□ 0.43
NUP98P52948 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
NUP98P52948 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NUP98P52948 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.74■□□□□ 0.43
NUP98P52948 AL365181.1-201ENST00000564032 1828 ntBASIC17.74■□□□□ 0.43
NUP98P52948 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NUP98P52948 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NUP98P52948 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
NUP98P52948 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NUP98P52948 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NUP98P52948 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NUP98P52948 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms