Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC12.31□□□□□ -0.44
HOXA1P49639 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HOXA1P49639 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 AC145098.2-201ENST00000623593 3026 ntBASIC12.3□□□□□ -0.44
HOXA1P49639 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.3□□□□□ -0.44
HOXA1P49639 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
HOXA1P49639 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.3□□□□□ -0.44
HOXA1P49639 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC12.3□□□□□ -0.44
HOXA1P49639 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 AP000344.2-201ENST00000512987 629 ntBASIC12.3□□□□□ -0.44
HOXA1P49639 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.3□□□□□ -0.44
HOXA1P49639 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC12.3□□□□□ -0.44
HOXA1P49639 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.3□□□□□ -0.44
HOXA1P49639 MIR4469-201ENST00000583919 79 ntBASIC12.3□□□□□ -0.44
HOXA1P49639 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 AC113367.3-201ENST00000508316 1912 ntBASIC12.3□□□□□ -0.44
HOXA1P49639 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 HERC2P10-201ENST00000570209 2393 ntBASIC12.3□□□□□ -0.44
HOXA1P49639 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC12.3□□□□□ -0.44
HOXA1P49639 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.3□□□□□ -0.44
HOXA1P49639 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HOXA1P49639 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
HOXA1P49639 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXA1P49639 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXA1P49639 KRT18P64-201ENST00000434946 1219 ntBASIC12.29□□□□□ -0.44
HOXA1P49639 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
HOXA1P49639 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXA1P49639 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.29□□□□□ -0.44
HOXA1P49639 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.29□□□□□ -0.44
HOXA1P49639 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.29□□□□□ -0.44
HOXA1P49639 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HOXA1P49639 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms