Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CR1P49238 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC131212.3-201ENST00000624087 4219 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CX3CR1P49238 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CX3CR1P49238 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 MYADML-201ENST00000474610 2147 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC134312.5-201ENST00000568031 1313 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
CX3CR1P49238 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 DGCR5-201ENST00000399539 862 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 BAATP1-201ENST00000412284 1225 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 TDH-203ENST00000531764 1110 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC12.97□□□□□ -0.33
CX3CR1P49238 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC145423.3-201ENST00000615987 467 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 ENPP7P14-201ENST00000621765 1040 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CR1P49238 AC011840.2-201ENST00000563063 1520 ntBASIC12.97□□□□□ -0.33
CX3CR1P49238 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.97□□□□□ -0.33
CX3CR1P49238 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.97□□□□□ -0.33
CX3CR1P49238 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CX3CR1P49238 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 FOS-202ENST00000535987 1402 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 CLUHP2-201ENST00000426660 1303 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CX3CR1P49238 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 RN7SKP230-201ENST00000365642 335 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 AC012441.1-201ENST00000446669 685 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CR1P49238 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 GCOM2-201ENST00000509133 1104 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 AC068587.3-201ENST00000526613 355 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 POLD4-211ENST00000539074 714 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CR1P49238 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.96□□□□□ -0.33
CX3CR1P49238 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CR1P49238 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.96□□□□□ -0.33
CX3CR1P49238 PIGL-212ENST00000581006 554 ntTSL 4 BASIC12.96□□□□□ -0.33
CX3CR1P49238 AC138696.2-201ENST00000607376 223 ntBASIC12.96□□□□□ -0.33
CX3CR1P49238 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CX3CR1P49238 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
CX3CR1P49238 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.34
CX3CR1P49238 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
CX3CR1P49238 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.96□□□□□ -0.34
CX3CR1P49238 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
CX3CR1P49238 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
CX3CR1P49238 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CX3CR1P49238 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms