Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
PTPN4P29074 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PTPN4P29074 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.84□□□□□ -0.03
PTPN4P29074 RPL13AP25-201ENST00000484130 612 ntBASIC14.84□□□□□ -0.03
PTPN4P29074 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.84□□□□□ -0.03
PTPN4P29074 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 BRI3BPP1-201ENST00000594224 787 ntBASIC14.84□□□□□ -0.03
PTPN4P29074 COX11-210ENST00000639671 696 ntBASIC14.84□□□□□ -0.03
PTPN4P29074 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN4P29074 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN4P29074 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
PTPN4P29074 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.83□□□□□ -0.03
PTPN4P29074 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN4P29074 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
PTPN4P29074 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN4P29074 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN4P29074 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
PTPN4P29074 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
PTPN4P29074 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.83□□□□□ -0.03
PTPN4P29074 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 AC073548.1-201ENST00000624088 1882 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTPN4P29074 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.83□□□□□ -0.04
PTPN4P29074 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 KRT223P-202ENST00000449164 1292 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 USP32P1-208ENST00000506594 1164 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 SLED1-202ENST00000512051 380 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.83□□□□□ -0.04
PTPN4P29074 SLC25A47P1-201ENST00000531577 414 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 AC233724.13-201ENST00000598383 410 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTPN4P29074 MIR6775-201ENST00000617557 69 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.83□□□□□ -0.04
PTPN4P29074 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
PTPN4P29074 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.83□□□□□ -0.04
PTPN4P29074 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 AC020658.7-201ENST00000624274 2442 ntBASIC14.83□□□□□ -0.04
PTPN4P29074 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
PTPN4P29074 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.83□□□□□ -0.04
PTPN4P29074 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
PTPN4P29074 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 AC090505.1-201ENST00000430515 1834 ntBASIC14.82□□□□□ -0.04
PTPN4P29074 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.82□□□□□ -0.04
PTPN4P29074 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
PTPN4P29074 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.82□□□□□ -0.04
PTPN4P29074 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms