Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.38□□□□□ -0.43
CD74P04233 PMP22-202ENST00000395936 816 ntTSL 3 BASIC12.38□□□□□ -0.43
CD74P04233 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 AP001002.3-201ENST00000623482 206 ntBASIC12.38□□□□□ -0.43
CD74P04233 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 AC009474.1-201ENST00000455096 1565 ntBASIC12.38□□□□□ -0.43
CD74P04233 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
CD74P04233 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
CD74P04233 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
CD74P04233 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.37□□□□□ -0.43
CD74P04233 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.37□□□□□ -0.43
CD74P04233 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.37□□□□□ -0.43
CD74P04233 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CD74P04233 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.37□□□□□ -0.43
CD74P04233 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.37□□□□□ -0.43
CD74P04233 GCOM2-201ENST00000509133 1104 ntBASIC12.37□□□□□ -0.43
CD74P04233 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 ZNF890P-202ENST00000530367 1156 ntBASIC12.37□□□□□ -0.43
CD74P04233 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.37□□□□□ -0.43
CD74P04233 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.37□□□□□ -0.43
CD74P04233 AC120114.3-201ENST00000611923 658 ntBASIC12.37□□□□□ -0.43
CD74P04233 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 AC004840.1-201ENST00000636359 365 ntBASIC12.37□□□□□ -0.43
CD74P04233 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.37□□□□□ -0.43
CD74P04233 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CD74P04233 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 AC024075.2-201ENST00000598112 1473 ntBASIC12.37□□□□□ -0.43
CD74P04233 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.37□□□□□ -0.43
CD74P04233 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CD74P04233 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CD74P04233 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms