Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SHC1P1-201ENST00000425230 1745 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 AC011498.7-201ENST00000624986 2027 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 LINC01230-201ENST00000625222 3017 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDKL5O76039 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDKL5O76039 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDKL5O76039 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDKL5O76039 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDKL5O76039 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CDKL5O76039 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CDKL5O76039 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDKL5O76039 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC17.08■□□□□ 0.33
CDKL5O76039 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CDKL5O76039 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.08■□□□□ 0.32
CDKL5O76039 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.08■□□□□ 0.32
CDKL5O76039 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.08■□□□□ 0.32
CDKL5O76039 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.08■□□□□ 0.32
CDKL5O76039 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.08■□□□□ 0.32
CDKL5O76039 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDKL5O76039 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
CDKL5O76039 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 AC063926.2-201ENST00000623766 1308 ntBASIC17.07■□□□□ 0.32
CDKL5O76039 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.07■□□□□ 0.32
CDKL5O76039 AC026954.1-201ENST00000429771 1293 ntBASIC17.07■□□□□ 0.32
CDKL5O76039 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 AP006547.1-201ENST00000563435 692 ntBASIC17.07■□□□□ 0.32
CDKL5O76039 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.07■□□□□ 0.32
CDKL5O76039 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.07■□□□□ 0.32
CDKL5O76039 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.07■□□□□ 0.32
CDKL5O76039 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.07■□□□□ 0.32
CDKL5O76039 AC012617.1-204ENST00000586340 2305 ntBASIC17.07■□□□□ 0.32
CDKL5O76039 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDKL5O76039 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 TCAM1P-207ENST00000485295 1537 ntBASIC17.06■□□□□ 0.32
CDKL5O76039 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
CDKL5O76039 CTBP1-AS2-206ENST00000581398 5652 ntBASIC17.06■□□□□ 0.32
CDKL5O76039 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CDKL5O76039 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CDKL5O76039 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.06■□□□□ 0.32
CDKL5O76039 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.06■□□□□ 0.32
CDKL5O76039 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDKL5O76039 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.06■□□□□ 0.32
CDKL5O76039 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.06■□□□□ 0.32
CDKL5O76039 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDKL5O76039 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDKL5O76039 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms