Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
UPK1AO00322 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
UPK1AO00322 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
UPK1AO00322 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
UPK1AO00322 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
UPK1AO00322 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
UPK1AO00322 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
UPK1AO00322 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 TPM3P8-201ENST00000330554 643 ntBASIC13.93□□□□□ -0.18
UPK1AO00322 AL035633.1-201ENST00000406139 838 ntBASIC13.93□□□□□ -0.18
UPK1AO00322 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.93□□□□□ -0.18
UPK1AO00322 FTLP10-202ENST00000505798 471 ntBASIC13.93□□□□□ -0.18
UPK1AO00322 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.93□□□□□ -0.18
UPK1AO00322 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.93□□□□□ -0.18
UPK1AO00322 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 AL022328.1-201ENST00000610050 478 ntBASIC13.93□□□□□ -0.18
UPK1AO00322 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC105233.6-201ENST00000642093 218 ntBASIC13.93□□□□□ -0.18
UPK1AO00322 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.93□□□□□ -0.18
UPK1AO00322 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
UPK1AO00322 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
UPK1AO00322 AC068760.1-201ENST00000493579 1953 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 FKBP4P6-201ENST00000457486 1332 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
UPK1AO00322 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.92□□□□□ -0.18
UPK1AO00322 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.92□□□□□ -0.18
UPK1AO00322 C2orf27AP3-201ENST00000434123 579 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 COX20P2-201ENST00000452636 358 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.92□□□□□ -0.18
UPK1AO00322 GCOM2-201ENST00000509133 1104 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
UPK1AO00322 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.92□□□□□ -0.18
UPK1AO00322 AL354718.3-201ENST00000616414 581 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 CR382287.1-201ENST00000623954 586 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.92□□□□□ -0.18
UPK1AO00322 AC111170.3-201ENST00000624282 2464 ntBASIC13.92□□□□□ -0.18
UPK1AO00322 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
UPK1AO00322 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms