Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 GPI-205ENST00000586425 1799 ntTSL 5 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLCF1Q9UBD9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 KHSRPP1-201ENST00000427983 1768 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 Z97180.1-201ENST00000445173 988 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 AL596276.2-201ENST00000447525 331 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 AL161670.2-201ENST00000557650 1227 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 CU633904.3-201ENST00000624042 1029 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 NAP1L6-202ENST00000641404 1222 ntBASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.05□□□□□ -0.32
CLCF1Q9UBD9 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
CLCF1Q9UBD9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 215.7 ms